Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865481:139865518:[+] chr10:117704275:117704308:[+] nonBSJ supported 3UTR

circRNA 5': GGA-CAA--UCCAUGUCUUCCAAGAAGCUCCAAGUCUUCCA 3'


            ||| | ||||| |||: ||| ||||| |||


target  3':UCCUCGCCAAAGGUAAAGAG---UCUGU---GUUCA--AGGA 5'

 -17.30 24 RIC-seq
chrX:139865689:139865698:[+] chr10:117704295:117704305:[+] nonBSJ supported 3UTR

circRNA 5':UGUGUCUUCC 3'


            |:| ||||


target  3':UCGCCAAAGGU 5'

 -5.90 1 RIC-seq
chrX:139865689:139865699:[+] chr10:117704294:117704305:[+] nonBSJ supported 3UTR

circRNA 5':UGUGUCUUCCA 3'


            |:| |||||


target  3':UCGCCAAAGGUA 5'

 -7.80 1 RIC-seq
chrX:139865689:139865699:[+] chr10:117704295:117704305:[+] nonBSJ supported 3UTR

circRNA 5':UGUGUCUUCCA 3'


            |:| |||||


target  3':UCGCCAAAGGU 5'

 -7.50 1 RIC-seq
chrX:139865356:139865373:[+] chr10:117045831:117045849:[+] nonBSJ supported CDS

circRNA 5':UGUGU--CAAGGUCUUCCAA 3'


            ||| ||||:| |||||


target  3':UUACUUCGUUCUA-AAGGUG 5'

 -11.20 2 RIC-seq
chrX:139865459:139865481:[+] chr10:116879947:116879968:[+] nonBSJ supported CDS

circRNA 5':UUCCAGACAAUCCAUGUCUUCCG 3'


            |||||| ||| ||


target  3':UAGGUCUUCCAAG-ACAAUUGGA 5'

 -11.60 36 RIC-seq
chrX:139865486:139865518:[+] chr10:117704275:117704298:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAAGAAGCUCCAAGUCUUCCA 3'


            ||||| |||: ||| ||||| |||


target  3': AGGUAAAGAG---UCUGU---GUUCA--AGGA 5'

 -15.70 1 RIC-seq
chrX:139865494:139865510:[+] chr10:117704238:117704251:[+] nonBSJ supported CDS

circRNA 5':CUUCCAAGAAGCUCCAA 3'


            |||| :|||||


target  3':UAAGGCC---UGAGGUC 5'

 -11.10 1 RIC-seq
chrX:139865631:139865664:[+] chr10:117001433:117001466:[+] nonBSJ supported CDS

circRNA 5':UUCAAGGUCUUC-CAUCAAAUACAGAUCUUCCAGC 3'


            |||||| ||| ||:||||:


target  3': AGUUCCUUCACAGUAAUACCCAUAAAGGAGGUUU 5'

 -16.00 9 RIC-seq
chrX:139865633:139865648:[+] chr10:117228694:117228709:[+] nonBSJ supported CDS

circRNA 5':CAAGG-UCUUCCAUCAA 3'


            ||| |||||| :||


target  3':CUUCAGAGAAGG-GGUC 5'

 -10.60 1 RIC-seq
chrX:139865651:139865683:[+] chr10:117226694:117226752:[+] nonBSJ supported CDS

circRNA 5': ACAGAUCUUCCA----------------------------GC--UAAUCCAUGUCUUCCAGAA 3'


            ||||| ||| || |||| ||:| ||||||


target  3':CUGUCU----GGUGCAUUACAACUCUAAUUUCAACAAACUACGUAAUUAACUAUAU-AGGUCUA 5'

 -13.30 37 RIC-seq
chrX:139865659:139865675:[+] chr10:117226740:117226755:[+] nonBSJ supported CDS

circRNA 5':UCCAGCUAAUCCAUGUC 3'


            || :| |||:||


target  3':UGGCUGUCU-GGUGCAU 5'

 -10.00 2 RIC-seq
chrX:139865660:139865685:[+] chr10:117001430:117001455:[+] nonBSJ supported CDS

circRNA 5':CCAGCUAAUCCAUGUCUUCCAGAAAA 3'


            || ||:||||:|||


target  3':AGUAAUACCCAUAAAGGAGGUUUUUA 5'

 -13.40 9 RIC-seq
chrX:139865670:139865695:[+] chr10:117704270:117704297:[+] nonBSJ supported CDS

circRNA 5': CAUGUCUUCCAGAAAAA---UCUGUGUCU 3'


            ||| ||| |||| ||: || |


target  3':GGUAAAGA--GUCUGUGUUCAAGGAACUGC 5'

 -8.00 1 RIC-seq
chrX:139865673:139865685:[+] chr10:117001430:117001442:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAA 3'


            ||:||||:|||


target  3':AAGGAGGUUUUUA 5'

 -13.10 2 RIC-seq
chrX:139865675:139865683:[+] chr10:117704237:117704244:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAA 3'


            |||||||


target  3':UGAGGUCU 5'

 -9.40 25 RIC-seq
chrX:139865689:139865724:[+] chr10:117001429:117001459:[+] nonBSJ supported CDS

circRNA 5':UGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAAUC 3'


            ||||| ||:||||: ||||


target  3':UCACAGUAAUACCCAUAA----AGGAGGUU-UUUAU 5'

 -14.60 2 RIC-seq
chrX:139865710:139865724:[+] chr10:117001429:117001442:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGUAAAUC 3'


            ||:||||: ||||


target  3':AAGGAGGUU-UUUAU 5'

 -10.10 1 RIC-seq
chrX:139865772:139865802:[+] chr10:116930903:116930947:[+] nonBSJ supported CDS

circRNA 5':AGAAAGAAA-UCCA-GGU------CUU-CCA-GUCAAU---CAG 3'


            ||| | |||| :|: || ||| ||| |||


target  3':ACUUACAGGGAGGUGUCGUAUGACGACUGGUACAGGUUCUUGUCA 5'

 -11.50 10 RIC-seq
chrX:139865773:139865802:[+] chr10:116930903:116930947:[+] nonBSJ supported CDS

circRNA 5': GAAAGAAA-UCCA-GGU------CUU-CCA-GUCAAU---CAG 3'


            ||| | |||| :|: || ||| ||| |||


target  3':ACUUACAGGGAGGUGUCGUAUGACGACUGGUACAGGUUCUUGUCA 5'

 -11.70 1 RIC-seq
chrX:139865779:139865790:[+] chr10:116930958:116930969:[+] nonBSJ supported CDS

circRNA 5':AAUCCAGGUCUU 3'


            |||||: ||:


target  3':AUAGGUUGAGGU 5'

 -11.10 1 RIC-seq
chrX:139865818:139865829:[+] chr10:116930958:116930969:[+] nonBSJ supported CDS

circRNA 5':AAUCCAGGUCUU 3'


            |||||: ||:


target  3':AUAGGUUGAGGU 5'

 -11.10 1 RIC-seq
chrX:139865898:139865928:[+] chr10:117309023:117309046:[+] nonBSJ supported CDS

circRNA 5':AUCU-UCCGGAAAAAAUCCAGGUCUUCCAGCC 3'


            ||| |||| || ||: :|||:|


target  3':GAGAGAGGC-------AGCUCUUC-GGGUUGU 5'

 -12.70 1 RIC-seq
chrX:139866296:139866307:[+] chr10:117228695:117228706:[+] nonBSJ supported CDS

circRNA 5':UUGUCUUCCCUC 3'


            | |||||||:


target  3':CAGAGAAGGGGU 5'

 -13.30 15 RIC-seq
chrX:139866620:139866651:[+] chr10:117308984:117309014:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCAUCUCCAG-GGCUUCCAGCAU 3'


            |:||||||| |:| ||| :||: ||||||


target  3':ACUAGAAGGUA-UGGU-GUCGUCGGUGGUCGUU 5'

 -34.40 1 RIC-seq
chrX:139866620:139866668:[+] chr10:117308966:117309014:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCAUCUCCAG-GGCUUCCAGCAUCUGCUCGUCUUC-CAACA 3'


            |:||||||| |:| ||| :||: |||||| ||||


target  3':ACUAGAAGGUA-UGGU-GUCGUCGGUGGUCGUUAUUCCUAUCCUUUGUUGA 5'

 -36.50 20 RIC-seq
chrX:139865486:139865518:[+] chr10:117704275:117704299:[+] nonBSJ supported Exon

circRNA 5':AUCCAUGUCUUCCAAGAAGCUCCAAGUCUUCCA 3'


            ||||| |||: ||| ||||| |||


target  3':AAGGUAAAGAG---UCUGU---GUUCA--AGGA 5'

 -16.20 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:116930903:116930947:[+] target - chr10:116930909-116930910 C>G BTCA-JP ICGC
chr10:117226694:117226752:[+] target - chr10:117226713-117226714 T>C LAML-KR ICGC
chr10:117704270:117704297:[+] target - chr10:117704287-117704288 C>T LICA-CN ICGC
chr10:117704275:117704298:[+] target - chr10:117704287-117704288 C>T LICA-CN ICGC
chr10:117704275:117704299:[+] target - chr10:117704287-117704288 C>T LICA-CN ICGC
chr10:117704275:117704308:[+] target - chr10:117704287-117704288 C>T LICA-CN ICGC
chrX:139865898:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC