Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865649:139865675:[+] chr9:139903890:139903916:[-] nonBSJ supported CDS

circRNA 5':AUACAGAUCUUCCAGCUAAUCCAUGUC 3'


            ||||| |:|| :|| ||||||:


target  3':CGUGUCGCGGAGCGUGAGGAGGUACGA 5'

 -24.20 16 RIC-seq
chrX:139865885:139865907:[+] chr9:139904476:139904496:[-] nonBSJ supported CDS

circRNA 5':CCAGUCAAUCCACAUCUUCCGGA 3'


            |||: ||:||||


target  3':UGUCGACGUCCAC--GAGGGCCC 5'

 -14.00 3 RIC-seq
chrX:139865899:139865907:[+] chr9:139904488:139904496:[-] nonBSJ supported CDS

circRNA 5':UCUUCCGGA 3'


            ||:||||


target  3':CGAGGGCCC 5'

 -11.80 1 RIC-seq
chrX:139866614:139866627:[+] chr9:139905750:139905764:[-] nonBSJ supported CDS

circRNA 5': AUCUCCAGGUCUUC 3'


            |:|| ||||||:|


target  3':UUGGAAGUCCAGGAC 5'

 -14.20 25 RIC-seq
chrX:139866629:139866661:[+] chr9:139904475:139904510:[-] nonBSJ supported CDS

circRNA 5':AGCAUCUCCAGG-GCUUCCA-GCAUCU-GCUCGUCU 3'


            ||| || |||| |||:|| || |||||||


target  3':AUGUCGACGUCCACGAGGGCCCGGCACUCGAGCAGC 5'

 -35.10 4 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865885:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865899:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC