Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865529:139865554:[+] chr9:13125213:13125245:[-] nonBSJ supported 5UTR

circRNA 5':UCUUCCAGCAAA-UCCAG-UCUU-----CCAGC 3'


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target  3':UGAAGCCUACCUGAGGCCAAGACCCCUCGGUCU 5'

 -9.10 2 RIC-seq
chrX:139866491:139866503:[+] chr9:13205958:13205971:[-] nonBSJ supported CDS

circRNA 5':GGU-ACGUCUUCCA 3'


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target  3':ACACUGCAGAAGGG 5'

 -16.30 2 RIC-seq
chrX:139866742:139866759:[+] chr9:13122101:13122121:[-] nonBSJ supported CDS

circRNA 5':ACUGGCUCAAUA---UCCAUG 3'


            |::||:|| |||||


target  3':AGGUCGGGUCUCAGAAGGUAG 5'

 -14.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:13125213:13125245:[-] target 1409768 chr9:13125218-13125219 G>A Hydrocephalus,_nonsyndromic,_autosomal_recessive_2|not_provided ClinVar
chr9:13125213:13125245:[-] target - chr9:13125214-13125215 C>T LICA-CN ICGC