Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865470:139865495:[+] chr9:23762044:23762084:[-] nonBSJ supported CDS

circRNA 5': CC-AUGUCUUCC----GGACAA---------UCCA-UGUCU 3'


            || ||| ||:|| :||| ||| ||||


target  3':UGGUUAC-GAGGGUUUCUCUGAGAAAUCAAGGAGGACACAGU 5'

 -16.80 6 RIC-seq
chrX:139865471:139865495:[+] chr9:23762047:23762084:[-] nonBSJ supported CDS

circRNA 5':CAUGUCUUCC----GGACAA---------UCCA-UGUCU 3'


            ||| ||:|| :||| ||| ||||


target  3':UUAC-GAGGGUUUCUCUGAGAAAUCAAGGAGGACACAGU 5'

 -14.70 1 RIC-seq
chrX:139865472:139865532:[+] chr9:23762012:23762091:[-] nonBSJ supported CDS

circRNA 5':AUGUCUU-----------CCGGACAAU------CC-AUGUCUUCC-AAGAAGCUCCA-AG-UCUUCCAGUAAAUCAAG-UCUU 3'


            |||||: | |||| || ||| ||:|| |||| :||| || ||:||| || ||| | |||


target  3':AACAGAGAAUGUUCGAAUGUCCUGAGAUAAAGUGGUUAC-GAGGGUUUCUCUGAGAAAUCAAGGAGGACAC--AGUACAAGAC 5'

 -36.40 9 RIC-seq
chrX:139866668:139866716:[+] chr9:23762041:23762091:[-] nonBSJ supported CDS

circRNA 5':AUCUCCACGUCUUCCAGCAU--CUCUGUG--UCUUCCAGCAUCUUCAUG-UCUU 3'


            || ||| ||:|||: |||| ||:||| ||||| |||


target  3':AAGUGGUUACGAGGGUUUCUCUGAGAAAUCAAGGAGGACAC---AGUACAAGAC 5'

 -28.60 20 RIC-seq
chrX:139866678:139866697:[+] chr9:23762070:23762084:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCAUCUCUGUGUCU 3'


            |||| || |||||||


target  3':CAAGG----AG-GACACAGU 5'

 -14.80 16 RIC-seq
chrX:139866686:139866697:[+] chr9:23762074:23762084:[-] nonBSJ supported CDS

circRNA 5':AUCUCUGUGUCU 3'


            || |||||||


target  3':GAG-GACACAGU 5'

 -12.40 1 RIC-seq
chrX:139866689:139866697:[+] chr9:23762076:23762084:[-] nonBSJ supported CDS

circRNA 5':UCUGUGUCU 3'


            |||||||


target  3':GGACACAGU 5'

 -11.70 1 RIC-seq
chrX:139866707:139866716:[+] chr9:23762081:23762091:[-] nonBSJ supported CDS

circRNA 5':UUCAUG-UCUU 3'


            ||||| |||


target  3':CAGUACAAGAC 5'

 -6.80 1 RIC-seq