Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865856:139865891:[+] chr9:123723761:123723794:[-] nonBSJ supported CDS

circRNA 5':AUCUACGU-CUUCCACCAAAUCCAGGU--CUUC-CAGUCA 3'


            |||||: ||| ||| ||: |||| ||| |


target  3':AAGAUGUGUGAACGUGCG------CCGAGGAAGUGUCUGA 5'

 -18.70 1 RIC-seq
chrX:139865894:139865925:[+] chr9:123723765:123723798:[-] nonBSJ supported CDS

circRNA 5':CCACAUCUU--C-CGGAAAAAAUC-CAGGUCUUCCA 3'


            ||||: | ||| || |||: ||| |


target  3':UGUGUGAACGUGCGCCGAGGA-AGUGUCU-GAAAGA 5'

 -12.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865894:139865925:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC