Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866013:139866036:[+] chr9:111868787:111868805:[-] nonBSJ supported CDS

circRNA 5':UCCAGAAAAUCCACGUCUUC-CCAA 3'


            |||||| || |||| |||


target  3': GGUCUUC----UG-AGAAAAGGUA 5'

 -9.60 1 RIC-seq
chrX:139866436:139866449:[+] chr9:111853407:111853423:[-] nonBSJ supported CDS

circRNA 5':AGGUACG---UCUUCCA 3'


            || || |||:||


target  3':ACCUCGCCUAAGAGGGG 5'

 -11.20 111 RIC-seq
chrX:139866486:139866504:[+] chr9:111868787:111868805:[-] nonBSJ supported CDS

circRNA 5':ACAAAGGUACGUCU--UCCAG 3'


            || |:| || ||| ||||


target  3':GGUCUUC-UG-AGAAAAGGUA 5'

 -8.30 1 RIC-seq
chrX:139866490:139866503:[+] chr9:111853407:111853423:[-] nonBSJ supported CDS

circRNA 5':AGGUACG---UCUUCCA 3'


            || || |||:||


target  3':ACCUCGCCUAAGAGGGG 5'

 -11.20 2 RIC-seq
chrX:139866490:139866511:[+] chr9:111853407:111853429:[-] nonBSJ supported CDS

circRNA 5':AGGUACG---UCUUCCAGAAAAUCC 3'


            || || |||:|| |||


target  3':ACCUCGCCUAAGAGGGGAC---AGGU 5'

 -11.40 1 RIC-seq
chrX:139866490:139866513:[+] chr9:111853407:111853429:[-] nonBSJ supported CDS

circRNA 5':AGGUACG---UCUUCCAGAAAAUCCAC 3'


            || || |||:|| ||||


target  3':ACCUCGCCUAAGAGGGGAC---AGGU 5'

 -13.50 49 RIC-seq
chrX:139866500:139866518:[+] chr9:111868787:111868809:[-] nonBSJ supported CDS

circRNA 5':UCCAGAAAA------UCCACGUCUU 3'


            |||||| |||| |||


target  3': GGUCUUCUGAGAAAAGGUA-AGAC 5'

 -8.60 1 RIC-seq
chrX:139866500:139866521:[+] chr9:111868787:111868805:[-] nonBSJ supported CDS

circRNA 5':UCCAGAAAAUCCACGUCU--UCCA 3'


            |||||| || ||| ||||


target  3': GGUCUUC----UG-AGAAAAGGUA 5'

 -9.80 1 RIC-seq
chrX:139866500:139866522:[+] chr9:111868787:111868805:[-] nonBSJ supported CDS

circRNA 5':UCCAGAAAAUCCACGUCU--UCCAA 3'


            |||||| || ||| ||||


target  3': GGUCUUC----UG-AGAAAAGGUA 5'

 -10.30 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:111853407:111853423:[-] target - chr9:111853412-111853413 C>T LAML-KR ICGC
chr9:111853407:111853429:[-] target - chr9:111853412-111853413 C>T LAML-KR ICGC