Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866687:139866701:[+] chr7:27856128:27856140:[+] nonBSJ supported CDS

circRNA 5':UCUCUGUGUCUUCCA 3'


            |||| ||| ||||


target  3':GGAGA-ACA-AAGGA 5'

 -10.60 1 RIC-seq
chrX:139866687:139866719:[+] chr7:27856109:27856139:[+] nonBSJ supported CDS

circRNA 5':UCUCUGUGUCUUCCAGCAUCUUCAUGUCUU---CCA 3'


            |||| ||| |||| |||: ||


target  3': GAGA-ACA-AAGGACUCUAC-GUAUUCCUAAUGG 5'

 -9.50 1 RIC-seq
chrX:139866687:139866719:[+] chr7:27856109:27856140:[+] nonBSJ supported CDS

circRNA 5':UCUCUGUGUCUUCCAGCAUCUUCAUGUCUU---CCA 3'


            |||| ||| |||| |||: ||


target  3':GGAGA-ACA-AAGGACUCUAC-GUAUUCCUAAUGG 5'

 -10.90 5 RIC-seq
chrX:139866786:139866812:[+] chr7:27827038:27827064:[+] nonBSJ supported CDS

circRNA 5':CUUCUGACAUUCAGGUCUUCCAGUGUC 3'


            ||||: ||||| |:|||


target  3':AAAGAUAAAGACAUAAGAAGUUUACAU 5'

 -12.00 16 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866786:139866812:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC