Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865725:139865758:[+] chr7:156480738:156480779:[-] nonBSJ supported CDS

circRNA 5':UAGUUCUUCCAGAAAAAUCUAGA---------UCUU-CCAGUCA 3'


            |||||||| ||| :||| || |||| ||


target  3': UCAAGAAGAGCUUGAC--GUCUCCACUUAAAAGCCUGGUCUGUG 5'

 -17.30 13 RIC-seq
chrX:139865725:139865786:[+] chr7:156480738:156480814:[-] nonBSJ supported CDS

circRNA 5':UAGUUCUUCCAGAAAAAUCUAGA---------UCUU-CCAGUCAAUCAGUGUCUUC-------CAGAAAG-AAAUCC-AGG 3'


            |||||||| ||| :||| || |||| || ||:||| || ||:|||| |||| |||


target  3': UCAAGAAGAGCUUGAC--GUCUCCACUUAAAAGCCUGGUCUGU--GUUACAACAGUGUUAUCGUUUUUCGUUUAACAUCCU 5'

 -29.30 1 RIC-seq
chrX:139865725:139865787:[+] chr7:156480738:156480814:[-] nonBSJ supported CDS

circRNA 5':UAGUUCUUCCAGAAAAAUCUAGA---------UCUU-CCAGUCAAUCAGUGUCUUC-------CAGAAAG-AAAUCC-AGGU 3'


            |||||||| ||| :||| || |||| || ||:||| || ||:|||| |||| |||


target  3': UCAAGAAGAGCUUGAC--GUCUCCACUUAAAAGCCUGGUCUGU--GUUACAACAGUGUUAUCGUUUUUCGUUUAACAUCCU 5'

 -29.90 15 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:156480738:156480779:[-] target - chr7:156480769-156480770 G>A BTCA-JP ICGC
chr7:156480738:156480814:[-] target - chr7:156480769-156480770 G>A BTCA-JP ICGC