Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865365:139865390:[+] chr7:136938223:136938246:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAACUCCGGGUCUUCCA 3'


            ||||||| ||:|||| |


target  3': AGAAGGUCAACGUCCCCUAGAAUG 5'

 -17.20 1 RIC-seq
chrX:139865365:139865391:[+] chr7:136938223:136938247:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAACUCCGGGUCUUCCAG 3'


            ||||||| ||:|||| ||


target  3': AGAAGGUCAACGUCCCCUAGAAUGU 5'

 -17.90 3 RIC-seq
chrX:139865542:139865569:[+] chr7:136936061:136936084:[-] nonBSJ supported CDS

circRNA 5':CCAGUCUUCCAGCAAUUACUGGUCUUCC 3'


            ||| ||||||| || |||||||||


target  3':AGUCUGAAGGUC---AA-GACCAGAAGU 5'

 -29.20 1 RIC-seq
chrX:139866021:139866043:[+] chr7:136938320:136938340:[-] nonBSJ supported CDS

circRNA 5':AUCCACGUCUUCCCAACAAUC-CA 3'


            ||||| ||| | |


target  3': AGGUGACCACCCG-UGUGUGUG 5'

 -8.20 2 RIC-seq
chrX:139865335:139865388:[+] chr7:137011445:137011505:[-] nonBSJ supported Intron

circRNA 5': UCCA--GGGUUUCCGAUGG---CACCUGU-GUCAAG------GUCU-UCCAACAACUCCGGGUCUUC 3'


            ||| ::|::||| ||: ||||: |: |||| ||||| ||| |||


target  3':GAGGACCUUCGGAGGGGACUUAGGUGGGAGUCGACUGAUUUUACAGAGAGGUUA------CCC-GAAA 5'

 -30.60 1 RIC-seq
chrX:139865376:139865389:[+] chr7:137011444:137011461:[-] nonBSJ supported Intron

circRNA 5':ACUCC-GG--GUCUUCC 3'


            |||| || |:||:||


target  3':GGAGGACCUUCGGAGGGG 5'

 -16.60 1 RIC-seq
chrX:139866356:139866408:[+] chr7:136934699:136934749:[-] nonBSJ supported Intron

circRNA 5': UCCAGCAAAUCCACGUCUUCC-AACAAAGCCAUGUCUUCCAUCAAAUUAAUGUC 3'


            ||| |||| ||| ||||| :|| ||||||| || ||:


target  3':CAGGAAAGACCGGUGGUCGUCCUUUGG-UCGGU-UAG-AGGUAGUGGAAG-ACGU 5'

 -29.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:137011445:137011505:[-] target - chr7:137011494-137011495 C>T PACA-CA ICGC