Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866368:139866385:[+] chr19:44131386:44131403:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAACAAAGCC 3'


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target  3':AGCAGGAGGUCCGCCCGU 5'

 -15.50 1 RIC-seq
chrX:139866368:139866398:[+] chr19:44131386:44131425:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAACAA----------AGCCAUGUCUUCCAUCA 3'


            ||||:|||| |||| :||: ||:|


target  3':AGCAGGAGGUCCGCCCGUAGACUCUCGGCCUAGGC-GUGGG 5'

 -23.80 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:44131386:44131403:[-] target - chr19:44131399-44131400 G>A LICA-CN ICGC
chr19:44131386:44131425:[-] target - chr19:44131399-44131400 G>A LICA-CN ICGC