Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865534:139865552:[+] chr19:18650393:18650410:[-] nonBSJ supported CDS

circRNA 5': CAGCAAAUCCAG-UCUUCCA 3'


            |||| ||| | ||:|||


target  3':GGUCG---AGGCCGAGGAGGA 5'

 -17.00 8 RIC-seq
chrX:139865822:139865843:[+] chr19:18652750:18652769:[-] nonBSJ supported CDS

circRNA 5':CAGGUCUUCCAGUCAG-UCAGUG 3'


            ||| || ||| ||||:


target  3': UCCCGA--GUCUCCCAAGUCGU 5'

 -10.70 1 RIC-seq
chrX:139865823:139865843:[+] chr19:18652751:18652769:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAG-UCAGUG 3'


            || || ||| ||||:


target  3':CCC-GA--GUCUCCCAAGUCGU 5'

 -9.90 8 RIC-seq
chrX:139866615:139866646:[+] chr19:18650405:18650440:[-] nonBSJ supported CDS

circRNA 5':UCUCCAGGUCUUCCA---GCA--UCUCCAG-GGCUUCC 3'


            |||| |: :|| || ||||||| |:| ||


target  3':GGAGGA-CGU-GGGCACACGGUAAGAGGUCGCUGCAGA 5'

 -25.10 17 RIC-seq
chrX:139866657:139866704:[+] chr19:18650376:18650434:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCA------ACAU---CUCCACGUCUUCCAGCAUCUCUGUGUC---UUCCAGCA 3'


            ||| :||| |||: |||| ||:||| |||:|: ||||:| :||||||


target  3': CAGUGGGUCUCACUUGUGGUCGAGGCCGAGGAGGACGUGGGCACACGGUAAGAGGUCGC 5'

 -49.90 7 RIC-seq