Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866329:139866352:[+] chr19:13006919:13006937:[+] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUCCAGGAAAUCCGUG 3'


            ||||||||| || :||:|


target  3':UGGUCCAGAA---CCA--GGGUAA 5'

 -19.80 1 RIC-seq
chrX:139866329:139866362:[+] chr19:13006907:13006937:[+] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUCCAGGAAAUCCGUGUCUUCC--AGCA 3'


            ||||||||| || :||:| |||


target  3':UGGUCCAGAA---CCA--GGGUAACUCCCACAUCGA 5'

 -21.60 18 RIC-seq
chrX:139866332:139866362:[+] chr19:13006907:13006933:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCCGUGUCUUCC--AGCA 3'


            |||||| || :||:| |||


target  3': CCAGAA---CCA--GGGUAACUCCCACAUCGA 5'

 -13.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:13006907:13006937:[+] target 984312 chr19:13006935-13006936 G>A Glutaric_aciduria,_type_1 ClinVar
chr19:13006919:13006937:[+] target 984312 chr19:13006935-13006936 G>A Glutaric_aciduria,_type_1 ClinVar
chr19:13006907:13006937:[+] target - chr19:13006936-13006937 G>T LICA-CN ICGC
chr19:13006919:13006937:[+] target - chr19:13006936-13006937 G>T LICA-CN ICGC