Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866730:139866771:[+] chr19:41937304:41937349:[-] nonBSJ supported 3UTR

circRNA 5':AGUCUUCC--AUCAACUGGCUCAAUAUCCAU-----GU-CUUCC-AACGUC 3'


            | |||| || ||||| |||||| || || |||||


target  3':AC-GAAGACUUAACUGACCUU----UAGGUAAACCCCACGACCCCUUGCAA 5'

 -15.70 1 RIC-seq
chrX:139866730:139866774:[+] chr19:41937304:41937354:[-] nonBSJ supported 3UTR

circRNA 5':AGUCUUCC--AUCAACUGGCUCAAUAUCCAU-----GU-CUUCC-AACGUC--UCC 3'


            | |||| || ||||| |||||| || || ||||| |||


target  3':AC-GAAGACUUAACUGACCUU----UAGGUAAACCCCACGACCCCUUGCAAUAAGG 5'

 -17.50 1 RIC-seq
chrX:139866730:139866775:[+] chr19:41937304:41937354:[-] nonBSJ supported 3UTR

circRNA 5':AGUCUUCC--AUCAACUGGCUCAAUAUCCAU-----GU-CUUCC-AACGUC--UCCA 3'


            | |||| || ||||| |||||| || || ||||| |||


target  3':AC-GAAGACUUAACUGACCUU----UAGGUAAACCCCACGACCCCUUGCAAUAAGG 5'

 -19.20 12 RIC-seq