Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866057:139866106:[+] chr19:4304673:4304728:[+] nonBSJ supported 5UTR

circRNA 5': AUUUGGGUCUU-CCUGAAAA-UCUACGU---CU---UCCAAAAAAGCCAUGUCUU--CCA 3'


            |::: ||:|: ||:| :|: ||: || ||| |||| ||:||| ||


target  3':GUGGGGCCGGGCCGGGCGCCCGGGGCGCGUGCGACCCAGGGG--UUCG--ACGGAAACGG 5'

 -30.20 1 RIC-seq
chrX:139866057:139866108:[+] chr19:4304684:4304736:[+] nonBSJ supported 5UTR

circRNA 5':AUUUGGGUCUUCCUGAAAAUCUACGUC--UUCCAAAAAAGCCAUGUCUUCCAGA 3'


            |:::|||| :||:| ||: ::|| || ||| :|||:


target  3':CGGGUCCAGUGGGGCCGGGCCGGGCGCCCGGGGCGCGUGCGACCCAG-GGGUUC 5'

 -29.00 1 RIC-seq