Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865380:139865400:[+] chr19:36606949:36606972:[+] nonBSJ supported 5UTR

circRNA 5':CGGGU---CUUCCAGCGACUUCAA 3'


            |||: |: |||||:|||:||


target  3':UCCCGACGGGUGGUCGUUGAGGUC 5'

 -27.40 2 RIC-seq
chrX:139865380:139865403:[+] chr19:36606947:36606972:[+] nonBSJ supported 5UTR

circRNA 5':CGGGU---CUUCCAGCGACUUCAAGUC 3'


            |||: |: |||||:|||:| |||


target  3':UCCCGACGGGUGGUCGUUGAGG-UCAA 5'

 -27.60 27 RIC-seq
chrX:139866674:139866714:[+] chr19:36606947:36607010:[+] nonBSJ supported 5UTR

circRNA 5':ACGUC--UUCCA-GCAUCUCUG---------------------UGUCUUCCAGCAUCUUCAUGUC 3'


            |||| :|||| :|| |||:: ||:|: |||||| ||:|| ||


target  3':AGCAGUUGAGGUAUGUCGAGGUCAAGGUACGUCCUUCGUCCCGACGGGUGGUCGUUGAGGU-CAA 5'

 -36.30 4 RIC-seq
chrX:139866674:139866722:[+] chr19:36606955:36607010:[+] nonBSJ supported CDS

circRNA 5':ACGUC--UUCCA-GCAUCUCUGUGUCUUCCA-GCAUCUU-CA----UGUCUUCCAACA 3'


            |||| :|||| :|| |||:: || |||| ||| || ||:|: ||| ||


target  3':AGCAGUUGAGGUAUGUCGAGGU-CA--AGGUACGUCCUUCGUCCCGACGGGUGGUCGUU 5'

 -31.20 35 RIC-seq
chrX:139866679:139866720:[+] chr19:36606988:36607032:[+] nonBSJ supported CDS

circRNA 5':UUCCAGCAUCUCUGUGU--CUUCCAG-CAUCUUCAUGUC-UUCCAA 3'


            |||||| ||||: ||| | || ||:|||: :||||


target  3':UAGGUCGAAC-GACAUCUUGAACAGCAGUUGAGGUAUGUCGAGGUC 5'

 -27.40 1 RIC-seq
chrX:139866754:139866779:[+] chr19:36616403:36616426:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAACGUCUCCAGUGU 3'


            || ||:| || ||:||||||


target  3': GG-ACGGUAGUAAAAAGGGGUCACC 5'

 -21.70 23 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:36616403:36616426:[+] target - chr19:36616426-36616427 G>T LICA-CN ICGC