Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865557:139865600:[+] chr8:103359270:103359317:[-] nonBSJ supported CDS

circRNA 5':UUACU----GGUCUUCCACCAAAUCCAGAUCUUCCAGGAAAAUCCA-CG 3'


            |||: |:||:||||||| |||| :|||||:| |||| ||


target  3':GAUGGUCUCCUAGGAGGUGGUGAAGGUGGGUGAGGUCUUG--AGGUCGCC 5'

 -42.70 1 RIC-seq
chrX:139865557:139865620:[+] chr8:103359270:103359316:[-] nonBSJ supported CDS

circRNA 5':UUACU----GGUCUUCCACCAAAUCCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUC 3'


            |||: |:||:||||||| |||||| :|||| |||||:| |||| |:


target  3':GAUGGUCUCCUAGGAGGUGGU---------GAAGGU------GGGUG----AGGUCUUG-AGGU-CGC 5'

 -45.20 15 RIC-seq
chrX:139865557:139865624:[+] chr8:103359270:103359322:[-] nonBSJ supported CDS

circRNA 5':UUACU----GGUCUUCCACCAAAUCCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCA-UGUCUUCC 3'


            |||: |:||:||||||| |||||| :|||| |||||:| |||| :| ||||


target  3':GAUGGUCUCCUAGGAGGUGGU---------GAAGGU------GGGUG----AGGUCUUG-AGGUCGCCGAAGA 5'

 -49.20 6 RIC-seq
chrX:139865667:139865685:[+] chr8:103358409:103358435:[-] nonBSJ supported Intron

circRNA 5':AUCCAUGUC---------UUCCAGAAAA 3'


            |||| ||| :||||||||


target  3':GGGGU-CAGCUUUCUCGUGAGGUCUUUA 5'

 -15.50 17 RIC-seq