Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866773:139866816:[+] chr8:134250352:134250394:[-] nonBSJ supported 3UTR

circRNA 5':CCAGUGUGCUGA--UCUUCUGACAUUCA-GGUCUUCCAGUGUCUGCA 3'


            ||| :||:| :|||| :|| |:| :|||::|| |||


target  3':CGUCU--UGAUUUCGGAAGUUUUU-GGUACUAC-GGGUUGCAAACGA 5'

 -21.10 23 RIC-seq
chrX:139865459:139865494:[+] chr8:134269030:134269067:[-] nonBSJ supported CDS

circRNA 5':UUCCAGACAAUCCAUGUCUUCCGGACAAUC---CAUGUC 3'


            ||||| ||||| |:|||||| |||| ||:||


target  3':CGGGUCAGGUAGGU-CGGAAGGCGUGUUCCCAAGUGCAA 5'

 -35.00 18 RIC-seq
chrX:139866740:139866786:[+] chr8:134249641:134249684:[-] nonBSJ supported Exon

circRNA 5': CAACUGGCUCAAUAUCCAU--GUCUUCCAACGUCUCCAGUGUGCUGAUC 3'


            |||||| :||| :||:|| ||| |||||| |||||:


target  3':GGUUGACGCCCCA--GGGUCUUUAGGAGCC--CAG-GGUCAC-CGACUGA 5'

 -38.70 22 RIC-seq
chrX:139866741:139866786:[+] chr8:134249642:134249684:[-] nonBSJ supported Exon

circRNA 5': AACUGGCUCAAUAUCCAU--GUCUUCCAACGUCUCCAGUGUGCUGAUC 3'


            ||||| :||| :||:|| ||| |||||| |||||:


target  3':GUUGACGCCCCA--GGGUCUUUAGGAGCC--CAG-GGUCAC-CGACUGA 5'

 -35.50 1 RIC-seq
chrX:139866742:139866786:[+] chr8:134249640:134249684:[-] nonBSJ supported Exon

circRNA 5':ACUGGCU-CAAUA-UCCAU--GUCUUCCAACGUCUCCAGUGUGCUGAUC 3'


            |:::|| | :||| :||:|| ||| |||||| |||||:


target  3':GGGUUGACGCCCCAGGGUCUUUAGGAGCC--CAG-GGUCAC-CGACUGA 5'

 -35.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:134269030:134269067:[-] target 2816736 chr8:134269032-134269033 C>T Charcot-Marie-Tooth_disease_type_4 ClinVar
chr8:134269030:134269067:[-] target 3007519 chr8:134269033-134269034 C>T Charcot-Marie-Tooth_disease_type_4 ClinVar
chr8:134269030:134269067:[-] target 1458165 chr8:134269035-134269036 G>GTCCA Charcot-Marie-Tooth_disease_type_4 ClinVar
chr8:134269030:134269067:[-] target 3595285 chr8:134269041-134269042 C>T Charcot-Marie-Tooth_disease_type_4D ClinVar
chr8:134269030:134269067:[-] target 2752793 chr8:134269046-134269047 C>CTCCACACA Charcot-Marie-Tooth_disease_type_4 ClinVar
chrX:139866773:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC