Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866536:139866580:[+] chr8:28428361:28428401:[+] nonBSJ supported 3UTR

circRNA 5':UCCAGAAAAUCCACGU----CUUCCAGAAAAUAUAUGUC----UUCCAACUAA 3'


            ||||||| ||| || ||||| |||:|| |||| ||||


target  3':UGGUCUUU--GGU-CAUAUGGAAGG--------AUAUAGUUGAAAGG-UGAUA 5'

 -24.20 1 RIC-seq
chrX:139866537:139866580:[+] chr8:28428361:28428399:[+] nonBSJ supported 3UTR

circRNA 5':CCAGAAAAUCCACGU----CUUCCAGAAAAUAUAUGUC----UUCCAACUAA 3'


            |||||| ||| || ||||| |||:|| |||| ||||


target  3': GUCUUU--GGU-CAUAUGGAAGG--------AUAUAGUUGAAAGG-UGAUA 5'

 -20.50 1 RIC-seq
chrX:139866627:139866637:[+] chr8:28428506:28428517:[+] nonBSJ supported 3UTR

circRNA 5':CCA-GCAUCUCC 3'


            || |||||||


target  3':UGUCCGUAGAGA 5'

 -11.80 2 RIC-seq