Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865760:139865778:[+] chr16:68293718:68293737:[+] nonBSJ supported 3UTR

circRNA 5': UCAGUGUCUUCCAGAAAGA 3'


            ||| ||:| ||||||


target  3':AAGUGACGGUGUCUCUUUCC 5'

 -15.00 1 RIC-seq
chrX:139865775:139865817:[+] chr16:68293718:68293758:[+] nonBSJ supported 3UTR

circRNA 5':AAGAAAUC-CAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGA 3'


            ||| || || |||||| || ||| ||:| ||||||


target  3':AUCUG-AGAGUAAAGAAGGA-AGA-AGUGACGGUGUCUCUUUCC 5'

 -27.60 17 RIC-seq
chrX:139865780:139865805:[+] chr16:68293656:68293680:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGU 3'


            ||||:| ||: |:| |:||


target  3':CAGGUUCUGAGCCCCGGAAC-UUACC 5'

 -13.50 1 RIC-seq
chrX:139865782:139865809:[+] chr16:68293661:68293693:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGU-CUUC-CAGUCAA----UCAGUGUCUUC 3'


            |||:| |||| ||||| || | |:|||


target  3': GUCUACGAAGUGUCAGGUUCUGAGCCCCGGAAC 5'

 -20.40 1 RIC-seq
chrX:139865782:139865817:[+] chr16:68293672:68293710:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCCAGUCAAUCAG-UGUCUUC-CAGA--AAGA 3'


            ||| ||||| ||| || |||| ||| ||||


target  3':UGUCGUGAAGGGGUACC-GUCUAC-GAAGUGUCAGGUUCUG 5'

 -22.60 1 RIC-seq
chrX:139865782:139865818:[+] chr16:68293672:68293710:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCCAGUCAAUCAG-UGUCUUC-CAGA--AAGAA 3'


            ||| ||||| ||| || |||| ||| ||||


target  3':UGUCGUGAAGGGGUACC-GUCUAC-GAAGUGUCAGGUUCUG 5'

 -23.20 2 RIC-seq
chrX:139865787:139865809:[+] chr16:68293661:68293688:[+] nonBSJ supported 3UTR

circRNA 5':UCUUC-CAGUCAA----UCAGUGUCUUC 3'


            |||| ||||| || | |:|||


target  3':CGAAGUGUCAGGUUCUGAGCCCCGGAAC 5'

 -14.90 1 RIC-seq
chrX:139866680:139866685:[+] chr16:68288796:68288801:[+] nonBSJ supported Exon

circRNA 5':UCCAGC 3'


            ||||


target  3':CGGUCA 5'

 -5.00 1 RIC-seq
chrX:139866727:139866732:[+] chr16:68288797:68288801:[+] nonBSJ supported Exon

circRNA 5':CCCAGU 3'


            ||||


target  3':CGGUC 5'

 -4.70 1 RIC-seq