Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865902:139865945:[+]	chr16:68901002:68901036:[+]	nonBSJ supported	CDS	circRNA 5':UCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGA 3' \|\|\|:\| \|\|\|:\| \|\| \|\|\| \|:\|: \|\| \| \|\|\| target 3':CGGCUUC-----GGUUC-GACCC-CGGGC-UGUGGAGUA-GACA 5'	-19.40	3	RIC-seq
chrX:139865917:139865958:[+]	chr16:68901003:68901037:[+]	nonBSJ supported	CDS	circRNA 5':GGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUU 3' \|:\| \|\|\|\|\|\| \|\| \|\|:\|\| \|\| \|:\|\|\| target 3':GCGGCU--UCGGUUCG--ACCCC-GGGCUGU--GGAGUAGAC 5'	-21.70	29	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139865902:139865945:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC