Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865686:139865718:[+] chr16:48304147:48304187:[+] nonBSJ supported CDS

circRNA 5':AUCUGUGUCUUC------CACCAA-AUC-CA-AGUCUUCCAG 3'


           |:|||||||:|| || ||| || | ||:||||


target  3':UGGACACAGGAGCUUACAGUCUGACUAGUGUAUGAGGAGGU 5'

 -25.90 9 RIC-seq
chrX:139865686:139865733:[+] chr16:48304124:48304187:[+] nonBSJ supported CDS

circRNA 5':AUCUGUGUCUUC------CACCAA-AUC-CA-AGUCUUCC-AGUA-AAUCUAGU-----UCUUC 3'


           |:|||||||:|| || ||| || | ||:||| ||| ||||: || |||:


target  3':UGGACACAGGAGCUUACAGUCUGACUAGUGUAUGAGGAGGUUCACGUUAGGACACCUUGAGAGC 5'

 -30.90 6 RIC-seq
chrX:139865688:139865770:[+] chr16:48304124:48304186:[+] nonBSJ supported CDS

circRNA 5': CUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAAUCUAGUUCUUCCAGAAAAAUC-UAGA-UCUUCC-AGU-CAAUCA-GUG----UCUUC 3'


            |||||||:|| | |||| ||| :| ||:||| ||| ||||| ||| |||:


target  3':GGACACAGGAG-----------------------------CUUACA-GUCUGACUAGUGUAUGAGGAGGUUCACGUUAGGACACCUUGAGAGC 5'

 -35.30 1 RIC-seq
chrX:139865690:139865733:[+] chr16:48304124:48304184:[+] nonBSJ supported CDS

circRNA 5': GUGUCUUC------CACCAA-AUC-CA-AGUCUUCC-AGUA-AAUCUAGU-----UCUUC 3'


            |||||:|| || ||| || | ||:||| ||| ||||: || |||:


target  3':ACACAGGAGCUUACAGUCUGACUAGUGUAUGAGGAGGUUCACGUUAGGACACCUUGAGAGC 5'

 -26.00 1 RIC-seq