Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865881:139865929:[+] chr16:30792956:30793035:[-] nonBSJ supported 3UTR

circRNA 5': UCUUCCAGUC--------------------AAUCCACA--UCUUC-C-GGAAAAAA------UCCAGGUCUUCCAG-CCA 3'


            |||||| |||||| ||:|| | ||| :|| |||| ||||| ||


target  3':GGGAAGGGGUACAUUAAAAAAACCCCCUUUUUUAGGUCACAAGGAGAGACCUCUCUCGCUCCGGGGACCAG-AGGUCUGGG 5'

 -34.30 1 RIC-seq
chrX:139865882:139865929:[+] chr16:30792957:30793035:[-] nonBSJ supported 3UTR

circRNA 5': CUUCCAGUC--------------------AAUCCACA--UCUUC-C-GGAAAAAA------UCCAGGUCUUCCAG-CCA 3'


            ||||| |||||| ||:|| | ||| :|| |||| ||||| ||


target  3':GGAAGGGGUACAUUAAAAAAACCCCCUUUUUUAGGUCACAAGGAGAGACCUCUCUCGCUCCGGGGACCAG-AGGUCUGGG 5'

 -33.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865881:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865882:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC