Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866650:139866690:[+] chrX:54839949:54839982:[+] nonBSJ supported CDS

circRNA 5':AUCUGCUCGUCUUC-CAACAUCUCCACGUCUUCCAGCAUCUC 3'


            |||||| || ||| || || || ||| |||


target  3': AGACGA-----AGUGUUUGAGUAGU-CACUAC-UCGAAGAA 5'

 -15.10 20 RIC-seq
chrX:139866650:139866690:[+] chrX:54839950:54839982:[+] nonBSJ supported CDS

circRNA 5':AUCUGCUCGUCUUC-CAACAUCUCCACGUCUUCCAGCAUCUC 3'


            |||||| || ||| || || || ||| |||


target  3': AGACGA-----AGUGUUUGAGUAGU-CACUAC-UCGAAGA 5'

 -14.50 1 RIC-seq
chrX:139866677:139866709:[+] chrX:54839949:54839978:[+] nonBSJ supported CDS

circRNA 5':UCUUC-CAGCAUC-UCUGUGUCUUCCAGCAUCUUC 3'


            |||| ||: || || ||| ||| ||||


target  3': GAAGUGUUUGAGUAGUCACUAC---UCGAAGAA 5'

 -13.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:54839949:54839982:[+] target 2687474 chrX:54839981-54839982 GAAGT>G Bartter_disease_type_5 ClinVar
chrX:54839950:54839982:[+] target 2687474 chrX:54839981-54839982 GAAGT>G Bartter_disease_type_5 ClinVar