Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865874:139865905:[+] chrX:24577629:24577666:[-] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUUC--------CAGUCAAUCCACA-UCUUCCG 3'


            ||| | ||::| ||||| |||| |||:||


target  3':GAGGACGAGGGGAUGUUGAAGUCAG---GGUGAAAGAGGGU 5'

 -26.50 1 RIC-seq
chrX:139865876:139865904:[+] chrX:24577648:24577672:[-] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCCAGUCAAUCCACAUCUUCC 3'


            ||| |:||| | ||| |||||||


target  3':AGUC---AGGGUGAAAGAGG-GUAGAAGU 5'

 -21.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865874:139865905:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865876:139865904:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC