Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866311:139866336:[+] chrX:47104467:47104487:[+] nonBSJ supported CDS

circRNA 5':UCCAUAGCUUCCGAAAAAUCCAGGUC 3'


            || :|||:|| || |||


target  3':UGGAGUCGGAGAU------GGAGCAGU 5'

 -14.20 1 RIC-seq
chrX:139866311:139866337:[+] chrX:47104467:47104487:[+] nonBSJ supported CDS

circRNA 5':UCCAUAGCUUCCGAAAAAUCCAGGUCU 3'


            || :|||:|| || |||


target  3':UGGAGUCGGAGAU------GGAGCAGU 5'

 -15.40 27 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866311:139866336:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866311:139866337:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:47104467:47104487:[+] target - chrX:47104470-47104471 C>T BTCA-JP ICGC