5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866279:139866332:[+] | chr12:93226384:93226432:[-] | nonBSJ supported | CDS |
circRNA 5':UGUCUU---C-CAGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCA 3' ||||: | |||| ||| || |||| ||||||| ||| target 3':CCAGAGAUGGAGUCUAUUAAGA--AGAAACUCGAAAACUCAUCGAAG-------AGGA 5' |
-19.10 | 16 | RIC-seq |
| chrX:139866447:139866482:[+] | chr12:93221776:93221819:[-] | nonBSJ supported | CDS |
circRNA 5': CCAACAAAGGUACGU---CUUCCAACAAA-GGUA---UGUCUU 3' || || |:| ||||| ||: |||||: target 3':AGGAAGUCGGAUGGUACUCGAAGGGGAUCAACCGCGAGACAGAG 5' |
-14.10 | 19 | RIC-seq |
| chrX:139866473:139866529:[+] | chr12:93221717:93221767:[-] | nonBSJ supported | CDS |
circRNA 5':GGUAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCUUC-CAACCAAGCC 3' ||| :|| ||| || | |||| || || ||| | |||| target 3': CAUUUAGUCGGUGAACAACAAGAAAUAGGU-----AGUUGAA-AAGUGAACUUUCGA 5' |
-15.70 | 23 | RIC-seq |
| chrX:139866483:139866501:[+] | chr12:93221798:93221819:[-] | nonBSJ supported | CDS |
circRNA 5': CCAACAAAGGUA--C-GUCUUC 3' || ||: | ||||: target 3':GGGGAUCAACCGCGAGACAGAG 5' |
-7.60 | 1 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr12:93226384:93226432:[-] | target | - | chr12:93226428-93226429 | C>T | BTCA-JP | ICGC |
| chrX:139866279:139866332:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |