Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865625:139865670:[+] chrX:147018042:147018084:[+] nonBSJ supported 5UTR

circRNA 5':AAUAAUUUCAAGGUCU--UCCAUCAAAUACAGAUCUUC-----CAGCUAAUCC 3'


            |:||:|:| | || ||||: :||||:| ||||| |||


target  3':GUGUUGAGGA--CUGAACAGGUG--------UUAGAGGACUUAGUCGAA-AGGU 5'

 -22.10 5 RIC-seq
chrX:139865625:139865671:[+] chrX:147018041:147018084:[+] nonBSJ supported 5UTR

circRNA 5':AAUAAUUUCAAGGUCU--UCCAUCAAAUACAGAUCUUC-----CAGCUAAUCCA 3'


            |:||:|:| | || ||||: :||||:| ||||| ||||


target  3':GUGUUGAGGA--CUGAACAGGUG--------UUAGAGGACUUAGUCGAA-AGGUA 5'

 -24.00 14 RIC-seq
chrX:139865625:139865671:[+] chrX:147018042:147018084:[+] nonBSJ supported 5UTR

circRNA 5':AAUAAUUUCAAGGUCU--UCCAUCAAAUACAGAUCUUC-----CAGCUAAUCCA 3'


            |:||:|:| | || ||||: :||||:| ||||| ||||


target  3':GUGUUGAGGA--CUGAACAGGUG--------UUAGAGGACUUAGUCGAA-AGGU 5'

 -23.70 3 RIC-seq
chrX:139865629:139865666:[+] chrX:147018077:147018113:[+] nonBSJ supported 5UTR

circRNA 5':AUUUCAAGGUCUUCCAUCAAAUACAGAUCUUC-CAGCUA 3'


            |:||| || || |||| | |:|:|| ||:||


target  3':AAGAGUAAAAGUCGG-AGUUAG-GAGUGGGAGUGUUGAG 5'

 -22.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:147018041:147018084:[+] target 9969 chrX:147018053-147018054 T>A Fragile_X_syndrome ClinVar
chrX:147018042:147018084:[+] target 9969 chrX:147018053-147018054 T>A Fragile_X_syndrome ClinVar