Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865487:139865526:[+] chrX:49045223:49045262:[-] nonBSJ supported 3UTR

circRNA 5': UCCA----UGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCA 3'


            ||| ||||:|| :|:|||||:|::|| ||


target  3':CAGGAUUUGACAGGAGAGA---UGGGGUUCGGGGGGGUUAG-AG 5'

 -31.30 1 RIC-seq
chrX:139865487:139865533:[+] chrX:49045223:49045268:[-] nonBSJ supported 3UTR

circRNA 5': UCCA----UGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUC 3'


            ||| ||||:|| :|:|||||:|::|| || |:|||


target  3':CAGGAUUUGACAGGAGAGA---UGGGGUUCGGGGGGGUUAG-AGA-CGGAA 5'

 -33.90 1 RIC-seq
chrX:139865487:139865535:[+] chrX:49045223:49045271:[-] nonBSJ supported 3UTR

circRNA 5': UCCA----UGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCA 3'


            ||| ||||:|| :|:|||||:|::|| || |:||| |


target  3':CAGGAUUUGACAGGAGAGA---UGGGGUUCGGGGGGGUUAG-AGA-CGGAAAGA 5'

 -34.60 15 RIC-seq
chrX:139865487:139865544:[+] chrX:49045223:49045279:[-] nonBSJ supported 3UTR

circRNA 5': UCCA----UGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCA 3'


            ||| ||||:|| :|:|||||:|::|| || |:||| | ||:||


target  3':CAGGAUUUGACAGGAGAGA---UGGGGUUCGGGGGGGUUAG-AGA-CGGAAAGAAA-UUGGGA 5'

 -38.30 17 RIC-seq
chrX:139865668:139865683:[+] chrX:49044391:49044402:[-] nonBSJ supported 3UTR

circRNA 5':UCCAUGUCUUCCAGAA 3'


            |||: |||||


target  3':CGGUGUC---GGUCU 5'

 -8.80 24 RIC-seq
chrX:139865938:139865953:[+] chrX:49044818:49044830:[-] nonBSJ supported 3UTR

circRNA 5':CUUC-CUGAAGAUCCAC 3'


            ||| ||| |||


target  3': AAGUGACGU---GGUA 5'

 -5.50 10 RIC-seq
chrX:139865951:139865976:[+] chrX:49044819:49044846:[-] nonBSJ supported 3UTR

circRNA 5': CACGUCUUCCAGAAAAUCCA--UGUCUU 3'


            ||| ||| ||:|:


target  3':AGUGACGU-GGUACCCCUCCCCGACGGGA 5'

 -9.80 1 RIC-seq
chrX:139865951:139865977:[+] chrX:49044819:49044847:[-] nonBSJ supported 3UTR

circRNA 5': CACGUCUUCCAGAAAAUCCA--UGUCUUC 3'


            ||| ||| ||:|:|


target  3':AGUGACGU-GGUACCCCUCCCCGACGGGAA 5'

 -10.40 7 RIC-seq
chrX:139865977:139866005:[+] chrX:49044819:49044846:[-] nonBSJ supported 3UTR

circRNA 5':CCAGAAAAUCCAUGUCUUCCAGUAACCUC 3'


            || ||||| |: ||:


target  3':AGUGACGU-GGUACCCCUCCCCGACGGGA 5'

 -9.50 1 RIC-seq