Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866606:139866650:[+] chrX:24830867:24830903:[+] nonBSJ supported CDS

circRNA 5':CUUCCUAUAUCUCC-AGGUCUUC-CAGCAUCUCCAGGGCUUCCAGCA 3'


            ||||:| ||| | || | ||:|| ||||:|| |||


target  3':UAAGGGU----AGGCUGCAACCGAGUUGUU--GGUCUCG----UCGC 5'

 -27.40 1 RIC-seq
chrX:139866606:139866663:[+] chrX:24830858:24830903:[+] nonBSJ supported CDS

circRNA 5':CUUCCUAUAUCUCC-AGGUCUUC-CAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUC 3'


            ||||:| ||| | || | ||:|| ||||:|| ||| |:|| ||||


target  3':UAAGGGU----AGGCUGCAACCGAGUUGUU--GGUCUCG----UCGC--AUGA--AGAAA 5'

 -30.30 18 RIC-seq