Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866285:139866301:[+] chrX:118377696:118377715:[+] nonBSJ supported 3UTR

circRNA 5':CCAGAA---AAUCCUUGUCU 3'


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target  3':UGUCGCGAAUUAGGUAUGGU 5'

 -6.60 18 RIC-seq
chrX:139866308:139866317:[+] chrX:118377698:118377707:[+] nonBSJ supported 3UTR

circRNA 5':AAAUCCAUAG 3'


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target  3':AUUAGGUAUG 5'

 -8.90 1 RIC-seq
chrX:139866308:139866319:[+] chrX:118377696:118377707:[+] nonBSJ supported 3UTR

circRNA 5':AAAUCCAUAGCU 3'


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target  3':AUUAGGUAUGGU 5'

 -11.20 22 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866308:139866319:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC