Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866632:139866663:[+] chrX:7268286:7268316:[+] nonBSJ supported 3UTR

circRNA 5':AUCUCCAGG-GCUUCCAGCAUCUGCUC-GUCUUC 3'


            ||:||||| ||| | ||| |||| ||||:


target  3':CAGGGGUCCGCGACGAUCGC---CGAGUCAGAGA 5'

 -31.80 1 RIC-seq
chrX:139866632:139866665:[+] chrX:7268280:7268316:[+] nonBSJ supported CDS

circRNA 5':AUCUCCAGG-GCUUCCAGCAUCUGCUC-GUCU----UCCA 3'


            ||:||||| ||| | ||| |||| |||| |||


target  3':CAGGGGUCCGCGACGAUCGC---CGAGUCAGAGAAUAGGA 5'

 -32.90 2 RIC-seq
chrX:139866632:139866673:[+] chrX:7268271:7268316:[+] nonBSJ supported CDS

circRNA 5':AUCUCCAGG-GCUUCCAGCAUCUGCUC-GUCU----UCCAACA--UCUCC 3'


            ||:||||| ||| | ||| |||| |||| ||| ||||


target  3':CAGGGGUCCGCGACGAUCGC---CGAGUCAGAGAAUAGGACAAAAAGAG 5'

 -34.70 15 RIC-seq