Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866678:139866724:[+]	chr18:19447443:19447498:[+]	nonBSJ supported	3UTR	circRNA 5':CUUCCAGCAUC------------UCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAAC 3' \|\|\|\| :\|\|: \|\|\| \|\|\|\| \|:\|\|\|\| \|\| \|\|:\|\|\|\|\|\|\| target 3':UAAGGAUGUGAUUAUGUUUUAAUAGAAA-AGAACUUU-UGGAAGAAC-GAGGGUUGUUU 5'	-27.30	1	RIC-seq
chrX:139865874:139865922:[+]	chr18:19378082:19378124:[+]	nonBSJ supported	CDS	circRNA 5':AUCCAGGUCUUCCAGUCAAUCCACAU-CUUCCGGAAA-AAAUCCAGGUCUU 3' \|\|\|\|:\| \|\|\|\|\|\| \|\|\|\|\|: \|\|\|\|\| \|\|\|\| target 3':CAGGUUCUACA--------AGGUGUUUGAAGGUGGAAAUUUAGUGACAGAC 5'	-27.90	2	RIC-seq
chrX:139866074:139866107:[+]	chr18:19379903:19379936:[+]	nonBSJ supported	CDS	circRNA 5':AAUCUACGUCUUCCAAAA-AAGCCAUGUCUUCCAG 3' \|\|\|:\|\|:\|\|\| \|\|\|\| :\|\|\|\|\|\|\| target 3':GUAGGUGUAGACCAGAAAAUUCGUU-UAGAAGGUG 5'	-26.00	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139865874:139865922:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC