Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865543:139865573:[+] chr18:9217573:9217607:[+] nonBSJ supported Intron

circRNA 5':CAGUCUUCCA-GCAAUU--AC-UGGUCUUCCACCA 3'


            || |||| || || ||| ||


target  3':UUCUGAAGAAACGACUCUUUGUACCUUUUUACGGA 5'

 -9.50 2 RIC-seq
chrX:139866224:139866288:[+] chr18:9171272:9171349:[+] nonBSJ supported Intron

circRNA 5':GUGUCUUCCAGCAAGUCCACGUCUUCCAACAA--AGCCAU----GUC------------UUCCAGACUAUCCAUGUCUUCCAG 3'


            ||||||| || ||:|||| || ||||| |:| :||||| ||| || | ||:||||


target  3': ACAGAAGUUC-UUUAGGUAAAGUACGAACCUCCUCGGUUCUACCGGCUUAUCCUUGUCGAGGUCAGAU--GU-C-GAGGGUCG 5'

 -40.30 1 RIC-seq
chrX:139866226:139866288:[+] chr18:9171272:9171347:[+] nonBSJ supported Intron

circRNA 5':GUCUUCCAGCAAGUCCACGUCUUCCAACAA--AGCCAU----GUC------------UUCCAGACUAUCCAUGUCUUCCAG 3'


            ||||| || ||:|||| || ||||| |:| :||||| ||| || | ||:||||


target  3': AGAAGUUC-UUUAGGUAAAGUACGAACCUCCUCGGUUCUACCGGCUUAUCCUUGUCGAGGUCAGAU--GU-C-GAGGGUCG 5'

 -36.00 1 RIC-seq