Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865916:139865940:[+] chr18:9258510:9258533:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGCCAAUAUAUGUCUU 3'


            ||| |||| :|||


target  3':AUCACAU-GUCGAUCGUUCUUAGAC 5'

 -7.80 2 RIC-seq
chrX:139866657:139866705:[+] chr18:9255937:9255997:[+] nonBSJ supported Exon

circRNA 5':CGUCUUCCAA--CAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUC--------------CAGCAU 3'


            || |||| ||||| |||: ||||| |||| || |||||


target  3':ACA-AAGGAUAGGUAGAAA---AGAGAUGAAAAGAGAGACAGCAGUCAAAAAAAUUAUCGUCGUC 5'

 -28.30 1 RIC-seq
chrX:139866657:139866705:[+] chr18:9255937:9256002:[+] nonBSJ supported Exon

circRNA 5':CGUC----UUCCAA--CAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUC--------------CAGCAU 3'


            ||| |||| ||||| |||: ||||| |||| || |||||


target  3':ACAGUACAAAGGAUAGGUAGAAA---AGAGAUGAAAAGAGAGACAGCAGUCAAAAAAAUUAUCGUCGUC 5'

 -29.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr18:9255937:9255997:[+] target - chr18:9255952-9255953 A>G PACA-CA ICGC
chr18:9255937:9256002:[+] target - chr18:9255952-9255953 A>G PACA-CA ICGC