Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865427:139865448:[+] chr18:13008478:13008500:[+] nonBSJ supported 5UTR

circRNA 5':AGAUAAUCC-UGAGCUUCCAGAA 3'


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target  3':ACUGUUUGCAACUGAAAGGUGUA 5'

 -12.90 4 RIC-seq
chrX:139865427:139865458:[+] chr18:13008477:13008500:[+] nonBSJ supported 5UTR

circRNA 5':AGAUAAUCC-UGAGCUUCCAGAAAAUCCACAUC 3'


            ||:|| ||| ||| |||||||


target  3':ACUGUUUGCAACU-GAA--------AGGUGUAU 5'

 -13.00 58 RIC-seq
chrX:139865851:139865885:[+] chr18:13042239:13042282:[+] nonBSJ supported CDS

circRNA 5': GAAAAA---UCUACGUCUUCCACCAAAUCCA-----GGUCUUC 3'


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target  3':ACUUCAUGAGAGAUGACGAAGUUGGACUUCACAUUAACUAGGAA 5'

 -15.20 3 RIC-seq
chrX:139865856:139865885:[+] chr18:13042239:13042273:[+] nonBSJ supported CDS

circRNA 5':AUCUACGUCUUCCACCAAAUCCA-----GGUCUUC 3'


            ||||| |||| ||| |:||:|


target  3':GAGAUGACGAAGUUGGACUUCACAUUAACUAGGAA 5'

 -15.10 25 RIC-seq
chrX:139865861:139865871:[+] chr18:13042235:13042245:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCACC 3'


            |||:| |||


target  3':CUAGGAAGUGA 5'

 -6.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr18:13042239:13042273:[+] target - chr18:13042262-13042263 G>T LINC-JP ICGC
chr18:13042239:13042273:[+] target - chr18:13042265-13042266 G>T LICA-CN ICGC
chr18:13042239:13042282:[+] target - chr18:13042262-13042263 G>T LINC-JP ICGC
chr18:13042239:13042282:[+] target - chr18:13042265-13042266 G>T LICA-CN ICGC