Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865481:139865520:[+] chr20:37394053:37394110:[+] nonBSJ supported CDS

circRNA 5': GGA-CAA--------------UCCAUGUCUUCC-AAGAA-GCUCCAAGUCUUCCAGU 3'


            ||| ||| ||||::|||||| |||| |||||| | :|||||


target  3':CCCUAGUUUUAGUAAGUACGAAAGGUGUAGAAGGUUUCUGCCGAGGUCGACGAGGUCC 5'

 -41.60 10 RIC-seq
chrX:139865486:139865520:[+] chr20:37394053:37394089:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCC-AAGAA-GCUCCAAGUCUUCCAGU 3'


            ||||::|||||| |||| |||||| | :|||||


target  3':AAGGUGUAGAAGGUUUCUGCCGAGGUCGACGAGGUCC 5'

 -40.30 1 RIC-seq