Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866348:139866373:[+] chr20:23615960:23615979:[-] nonBSJ supported CDS

circRNA 5':CCGUGUCUUCCAGCAAAUCCACGUCU 3'


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target  3':AGC-CG---GGUCG---AGGUGCAGGU 5'

 -24.10 17 RIC-seq
chrX:139866355:139866373:[+] chr20:23615963:23615979:[-] nonBSJ supported CDS

circRNA 5':UUCCAGCAAAUCCACGUCU 3'


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target  3':CGGGUCG---AGGUGCAGGU 5'

 -23.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr20:23615960:23615979:[-] target 5634 chr20:23615967-23615968 A>T Hereditary_cerebral_amyloid_angiopathy,_Icelandic_type ClinVar
chr20:23615963:23615979:[-] target 5634 chr20:23615967-23615968 A>T Hereditary_cerebral_amyloid_angiopathy,_Icelandic_type ClinVar