Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866362:[+] chr20:36641785:36641820:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCC--AGCA 3'


            |||: :||| :||| :||| :||||::| |||


target  3':CCGAGUAUUUU------UCAG-----UCUUAC--UACAGGGGUAUUCGA 5'

 -17.80 17 RIC-seq
chrX:139866316:139866362:[+] chr20:36641786:36641820:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCC--AGCA 3'


            |||: :||| :||| :||| :||||::| |||


target  3': CGAGUAUUUU------UCAG-----UCUUAC--UACAGGGGUAUUCGA 5'

 -17.00 3 RIC-seq
chrX:139866339:139866362:[+] chr20:36641798:36641820:[-] nonBSJ supported CDS

circRNA 5':CCAGGAAAUCCGUGUCUUCC--AGCA 3'


            |||:| :||||::| |||


target  3':AGUCUUAC---UACAGGGGUAUUCGA 5'

 -15.30 19 RIC-seq
chrX:139866382:139866416:[+] chr20:36641785:36641820:[-] nonBSJ supported CDS

circRNA 5':AGC-CAUGUCUUCCAUCAAAUUAAUGUCUUCC--AGCC 3'


            || |||: ||| |||||::| |||


target  3':CCGAGUAUUUUUC--AGUCUUACUACAGGGGUAUUCGA 5'

 -15.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC