Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865820:139865868:[+] chr20:5177087:5177161:[+] nonBSJ supported 3UTR

circRNA 5':UCCAGGU--------CUUCC-AGU--------CAGUCAGUGUCUUC---------CAGAAAAAUCUACGUCUU-CC 3'


            |||||| |||| ||| ||| ||: |||:|| ||:|| ||| |:|:| ||


target  3':UGGUCCACCGAUUGGGAAGACUCACGAAAUACGUCCGUUCCAGGAGACCCCCGACGUUUUCC--GAUCCGGGACGGG 5'

 -27.80 1 RIC-seq
chrX:139866650:139866703:[+] chr20:5177040:5177094:[+] nonBSJ supported 3UTR

circRNA 5':AUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCA-UCUCUGUGUC--UUCCAGC 3'


            |||||:|: :|| |||| ||| ||||||: ||||||


target  3':GGGACGGGUUACGGGCCCUCU-GGUGACGUUUC-CGUAAGAGACGAACUAAAGGUCU 5'

 -38.20 1 RIC-seq
chrX:139866671:139866703:[+] chr20:5177040:5177074:[+] nonBSJ supported 3UTR

circRNA 5':UCCACGUCUUCCAGCA-UCUCUGUGUC--UUCCAGC 3'


            |||| ||| ||||||: ||||||


target  3':UGGUGACGUUUC-CGUAAGAGACGAACUAAAGGUCU 5'

 -25.50 1 RIC-seq
chrX:139866700:139866748:[+] chr20:5171672:5171709:[+] nonBSJ supported Exon

circRNA 5': CAGCAUCUUCAUGUCUUCCAACAACUACCCAGU-CUUCCAUCAACUGGCU 3'


            ||||| | || |||| |||: | ||| ||||


target  3':AGUCGUCGUCGUUCAGAU------------GUCGUGUUUGUACCU-ACCGU 5'

 -18.70 2 RIC-seq