Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866276:139866318:[+] chr20:3782954:3782992:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAGAAAAUCCUUG-UCUUCCCUCAAAUCCAUAGC 3'


            ||: ||||| ||:| |||: || ||:||


target  3':AGUGAC--AGGUCCUCCAAGAGCUAGAGU--AGCACU-GUGUCA 5'

 -16.90 1 RIC-seq
chrX:139866293:139866324:[+] chr20:3782996:3783025:[+] nonBSJ supported CDS

circRNA 5':UCCUUGUCUUCC-CUCAAAUCCAUAGCUUCCGA 3'


            ||||: ||| |||| ||||: ||


target  3':UGGAAUCUCAUUAGAGGUUAG---UCGAGAGCC 5'

 -15.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866276:139866318:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866293:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC