Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865659:139865681:[+] chr14:32624538:32624574:[+] nonBSJ supported 3UTR

circRNA 5': UCC-----AGCUAAUC------CAU-GUCUUCCAG 3'


            ||| ||| ||| || :|| ||||


target  3':CGGGUUUAAUCGUGUAGUUUAUUGUUUUAGUCGGUCU 5'

 -10.90 1 RIC-seq
chrX:139865663:139865713:[+] chr14:32624557:32624606:[+] nonBSJ supported 3UTR

circRNA 5':GCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCA----CCAAAUC--CAAGUCU 3'


            ||| || | || |||||| |||: |||||| || :||


target  3':AGAUGUGG--CUGACGGUCUU-----ACAUUUAAUUCAACGGGUUUAAUCGUGUAGU 5'

 -19.00 8 RIC-seq
chrX:139865754:139865776:[+] chr14:32624587:32624608:[+] nonBSJ supported 3UTR

circRNA 5':AGUCAAUCAGUGUCUUCCAGAAA 3'


            ||| || :| || ||||||


target  3':AUAGAU-GUGGCUGACGGUCUUA 5'

 -14.70 9 RIC-seq
chrX:139865444:139865463:[+] chr14:32562756:32562773:[+] nonBSJ supported CDS

circRNA 5':CAGAAAAUCCACAUCUUC-CA 3'


            |||||| |||||||| |


target  3':AUCUUUU---UGUAGAAGUGA 5'

 -13.40 4 RIC-seq
chrX:139866105:139866124:[+] chr14:32562756:32562773:[+] nonBSJ supported CDS

circRNA 5':CAGAAAAUCCACAUCUUC-CA 3'


            |||||| |||||||| |


target  3':AUCUUUU---UGUAGAAGUGA 5'

 -13.40 4 RIC-seq
chrX:139866274:139866302:[+] chr14:32561566:32561615:[+] nonBSJ supported CDS

circRNA 5':AUCCA--------------------------UGUCUUCCAGAAAAUCCUUGUCUU 3'


           ||||| ||: |||| |||||


target  3':UAGGUUGACAUUUUCUGAUGAUCGUUCAUUGACG--AGGUGAAAUU---ACAGAC 5'

 -10.40 1 RIC-seq
chrX:139866274:139866316:[+] chr14:32561550:32561615:[+] nonBSJ supported CDS

circRNA 5':AUCCA--------------------------UGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAU--CCAUA 3'


           ||||| ||: |||| ||||| |||:


target  3':UAGGUUGACAUUUUCUGAUGAUCGUUCAUUGACG--AGGUGAAAUU---ACAGACAUGUUAAAACCGGUGA 5'

 -12.30 23 RIC-seq
chrX:139866278:139866316:[+] chr14:32561550:32561585:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAU--CCAUA 3'


            ||: |||| ||||| |||:


target  3':GACG--AGGUGAAAUU---ACAGACAUGUUAAAACCGGUGA 5'

 -11.10 2 RIC-seq
chrX:139866309:139866356:[+] chr14:32561566:32561615:[+] nonBSJ supported CDS

circRNA 5':AAUCCAUAGCUUCC-GAAAAAUC-CAGGU--CU--UCCAGGAAAUCCGUGUCUU 3'


            ||||| || ||:|| || |||| :|||||


target  3': UAGGUUGACAUUUUCUGAUGAUCGUUCAUUGACGAGGUGAAAU---UACAGAC 5'

 -15.00 2 RIC-seq
chrX:139866309:139866364:[+] chr14:32561561:32561615:[+] nonBSJ supported CDS

circRNA 5':AAUCCAUAGCUUCC-GAAAAAUC-CAGGU--CU--UCCAGGAAAUCCGUGUCUUCCAGCAAA 3'


            ||||| || ||:|| || |||| :||||| :|||


target  3': UAGGUUGACAUUUUCUGAUGAUCGUUCAUUGACGAGGUGAAAU---UACAGACA--UGUU 5'

 -16.10 21 RIC-seq
chrX:139866314:139866364:[+] chr14:32561561:32561596:[+] nonBSJ supported CDS

circRNA 5':AUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAA 3'


            |||| |||| :||||| :|||


target  3':GAUCGUUCAUUGACGAGGUGAAAU------------UACAGACA--UGUU 5'

 -13.00 1 RIC-seq
chrX:139866319:139866360:[+] chr14:32561577:32561615:[+] nonBSJ supported CDS

circRNA 5':UUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAG 3'


            |||:| |:| || | || || ||: ||||


target  3':UAGGUUGACAUU-UUCUGAUGAUCGUUCAUUGACG--AGGUG 5'

 -14.00 1 RIC-seq
chrX:139866498:139866506:[+] chr14:32561185:32561193:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGAA 3'


            |||||:|


target  3':AAAGGUUUC 5'

 -7.50 27 RIC-seq
chrX:139866650:139866707:[+] chr14:32560653:32560720:[+] nonBSJ supported CDS

circRNA 5':AUCUGCUCGUC---UUCCAAC--AUCUCCACGUCUUCCAGCA-----UCUCUGUGUCUUCC-AGCAUCU 3'


            ||||| |: ||| ||| |||| ||:|| ||||||||| ||||||


target  3':CAGACGUGUUCAAAAAGUUUGAAUAGACAACGACACUGUUGUUCAACAGAGACACAAAAUAUUCGUAG 5'

 -33.90 1 RIC-seq
chrX:139866650:139866708:[+] chr14:32560651:32560720:[+] nonBSJ supported CDS

circRNA 5':AUCUGCUCGUC---UUCCAAC--AUCUCCACGUCUUCCAGCA-----UCUCUGUGUCUUCC-AGCAUCUU 3'


            ||||| |: ||| ||| |||| ||:|| ||||||||| ||||||:


target  3':CAGACGUGUUCAAAAAGUUUGAAUAGACAACGACACUGUUGUUCAACAGAGACACAAAAUAUUCGUAGGU 5'

 -34.80 22 RIC-seq
chrX:139866651:139866708:[+] chr14:32560651:32560720:[+] nonBSJ supported CDS

circRNA 5': UCUGCUCGUC---UUCCAAC--AUCUCCACGUCUUCCAGCA-----UCUCUGUGUCUUCC-AGCAUCUU 3'


            ||||| |: ||| ||| |||| ||:|| ||||||||| ||||||:


target  3':CAGACGUGUUCAAAAAGUUUGAAUAGACAACGACACUGUUGUUCAACAGAGACACAAAAUAUUCGUAGGU 5'

 -34.70 3 RIC-seq
chrX:139866676:139866696:[+] chr14:32561209:32561230:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCA--GCAUCUCUGUGUC 3'


            |||:||| || |:||| ||


target  3':AGGAGGGUACCGACGGGAC-CAC 5'

 -16.60 18 RIC-seq
chrX:139866696:139866720:[+] chr14:32560711:32560748:[+] nonBSJ supported CDS

circRNA 5':CUUCCA----GCA------UCU-UCAU-GUCUUC-CAA 3'


            ||||| ||| ||| |||: |||| | ||


target  3':AAAGGUUCAACGUACUAUUAGAGAGUGUCAGACGUGUU 5'

 -13.80 20 RIC-seq
chrX:139866697:139866720:[+] chr14:32560711:32560748:[+] nonBSJ supported CDS

circRNA 5': UUCCA----GCA------UCU-UCAU-GUCUUC-CAA 3'


            ||||| ||| ||| |||: |||| | ||


target  3':AAAGGUUCAACGUACUAUUAGAGAGUGUCAGACGUGUU 5'

 -13.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:32560711:32560748:[+] target - chr14:32560737-32560738 G>A BTCA-JP ICGC
chr14:32560711:32560748:[+] target - chr14:32560737-32560738 G>T LINC-JP ICGC
chr14:32561209:32561230:[+] target - chr14:32561216-32561217 G>T LICA-CN ICGC
chrX:139866309:139866356:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866309:139866364:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866314:139866364:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC