Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866761:139866803:[+] chr14:92474070:92474101:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCU 3'


            |||| |:|||||: | |||| |:|||


target  3':CAAGGAAACGGAGGUUUAAUU-C-AGAA---------UUCAGU 5'

 -19.00 1 RIC-seq
chrX:139866761:139866824:[+] chr14:92474070:92474118:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCUGCAAUAUCCAG 3'


            |||| |:|||||: | |||| |:||| |||| |||||


target  3':CAAGGAAACGGAGGUUUAAUU-C-AGAA---------UUCAGUACAUUA-AGACU---UAGGUU 5'

 -26.50 1 RIC-seq
chrX:139866761:139866825:[+] chr14:92474070:92474119:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCUGCAAUAUCCAGG 3'


            |||| |:|||||: | |||| |:||| |||| |||||:


target  3':CAAGGAAACGGAGGUUUAAUU-C-AGAA---------UUCAGUACAUUA-AGACU---UAGGUUU 5'

 -27.10 17 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:92474070:92474101:[-] target 3358864 chr14:92474073-92474074 C>A Achondrogenesis,_type_IA ClinVar
chr14:92474070:92474118:[-] target 3358864 chr14:92474073-92474074 C>A Achondrogenesis,_type_IA ClinVar
chr14:92474070:92474119:[-] target 3358864 chr14:92474073-92474074 C>A Achondrogenesis,_type_IA ClinVar
chrX:139866761:139866803:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866761:139866824:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866761:139866825:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC