Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865571:139865609:[+] chr14:91929118:91929171:[-] nonBSJ supported CDS

circRNA 5':CCAAAUC-CAGAUCU--UCCAG-GAA-----------AAUCCACGUCUUCCAGG 3'


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target  3':AGUUUAGAGUCAAAAUUAGGAAAUUUACAGACAUGUAUUAGAUGUAGAAGGUCA 5'

 -28.90 2 RIC-seq
chrX:139866796:139866824:[+] chr14:91929156:91929181:[-] nonBSJ supported CDS

circRNA 5': UC-AGGUCUUCCAGUGUCUGCAAUAUCCAG 3'


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target  3':UAGAUGUAGAAGGUCACGAA------AGGUCA 5'

 -24.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr14:91929118:91929171:[-] target - chr14:91929170-91929171 G>T PACA-CA ICGC
chr14:91929156:91929181:[-] target - chr14:91929170-91929171 G>T PACA-CA ICGC