Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865942:139865957:[+] chr14:71522228:71522243:[+] nonBSJ supported CDS

circRNA 5':CUGAA-GAUCCACGUCU 3'


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target  3':AACUUACUAGGUG-AGC 5'

 -15.70 2 RIC-seq
chrX:139866279:139866290:[+] chr14:71517369:71517379:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAA 3'


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target  3':UCA-AGGGUUUC 5'

 -7.00 1 RIC-seq
chrX:139866311:139866320:[+] chr14:71517367:71517375:[+] nonBSJ supported CDS

circRNA 5':UCCAUAGCUU 3'


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target  3':GGGUUUCGA 5'

 -8.50 19 RIC-seq
chrX:139866312:139866320:[+] chr14:71517393:71517402:[+] nonBSJ supported CDS

circRNA 5':CCAU-AGCUU 3'


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target  3':UGUGUUUGAC 5'

 -2.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866311:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866312:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC