Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865667:139865689:[+] chr14:103808207:103808232:[+] nonBSJ supported 3UTR

circRNA 5':AUCCAUG--UCUUCCAGA-AAAAUCU 3'


            ||| || |||:|||:| ||||||


target  3':AAGGAACAAAGAGGGUUUAUUUUAGU 5'

 -18.60 1 RIC-seq
chrX:139865689:139865730:[+] chr14:103808203:103808241:[+] nonBSJ supported 3UTR

circRNA 5':UGUGUCUUCCACCAAAUCCAAG--UCUUCCAGU--AAAUCUAGUUC 3'


            ||| |||| ||| |||:|||: ||||| ||||


target  3':UCAC-----GUGGGA-AGGAACAAAGAGGGUUUAUUUUAG-UCAAA 5'

 -23.10 35 RIC-seq
chrX:139865792:139865824:[+] chr14:103808732:103808753:[+] nonBSJ supported 3UTR

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAG 3'


            | |||| |||| |||| |:|||


target  3':AUGAGUUUGUCA------GUCU-----UGGGUA 5'

 -13.20 1 RIC-seq
chrX:139865830:139865851:[+] chr14:103808732:103808750:[+] nonBSJ supported 3UTR

circRNA 5':CCAGUCAGUCAGUGUCUUCCAG 3'


            ||: ||||||| :|||


target  3':AGUUUGUCAGUCUU---GGGUA 5'

 -15.40 26 RIC-seq
chrX:139866526:139866540:[+] chr14:103802415:103802429:[+] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCCAG 3'


            || |:||| |||


target  3':ACGUUGCAGUUGGUA 5'

 -13.30 2 RIC-seq
chrX:139866546:139866594:[+] chr14:103802415:103802455:[+] nonBSJ supported CDS

circRNA 5':CCACGUCUU---CCAGAAAAUAUAUGUCUUCCAACUAAGCUACGUCUUCCAA 3'


            ||||| || || || :|:||| || ||||| |||


target  3': GUGCAACCUCCGG-CUA--AUUCGCGGAAA-------CGUUGCAGUUGGUA 5'

 -20.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866546:139866594:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC