Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866278:139866335:[+] chr22:46748176:46748221:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGAAAAUCCUUGUCUUCCCUC-AAAUCCAUAGCUUCCGAAAAAUCCAGGU 3'


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target  3':CACA-AGGGUCUUGGAAUAACAGAAGAUACCUUUA-----------UUUCACUGGUCC 5'

 -25.30 1 RIC-seq
chrX:139866278:139866344:[+] chr22:46748169:46748221:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGAAAAUCCUUGUCUUCCCUC-AAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGA 3'


            ||| |:|||||| | |||||||| |||| :|| ||||||| |||


target  3':CACA-AGGGUCUUGGAAUAACAGAAGAUACCUUUA-----------UUUCACUGGUCCAGC---UCCG 5'

 -31.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr22:46748169:46748221:[+] target 2679299 chr22:46748192-46748193 C>CT Aminoglycoside-induced_deafness ClinVar
chr22:46748169:46748221:[+] target 217019 chr22:46748213-46748214 T>C Acute_infantile_liver_failure_due_to_synthesis_defect_of_mtDNA-encoded_proteins ClinVar
chr22:46748176:46748221:[+] target 2679299 chr22:46748192-46748193 C>CT Aminoglycoside-induced_deafness ClinVar
chr22:46748176:46748221:[+] target 217019 chr22:46748213-46748214 T>C Acute_infantile_liver_failure_due_to_synthesis_defect_of_mtDNA-encoded_proteins ClinVar
chrX:139866278:139866335:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866278:139866344:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC