Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865500:139865507:[+] chr22:50904683:50904690:[-] nonBSJ supported CDS

circRNA 5':AGAAGCUC 3'


            ||||||


target  3':ACUUCGAC 5'

 -8.40 1 RIC-seq
chrX:139866617:139866650:[+] chr22:50898714:50898755:[-] nonBSJ supported CDS

circRNA 5': UCCAGGUCUUC------CAGCAU-CUCCAGG-GCUUCCAGCA 3'


            ||| ||||:|| | || |:|| || |||:|||||


target  3':GAGGACCAGGAGUCCCCCGCCGACCGGGG-CCACGAGGGUCGA 5'

 -38.90 1 RIC-seq
chrX:139866617:139866650:[+] chr22:50898738:50898776:[-] nonBSJ supported CDS

circRNA 5': UCCAGGU-CUUCCAGCAUCUCCAGGG-----CUUCCAGCA 3'


            ||| ||| ||:||||| ||| |||| ||


target  3':CGGGGCCACGAGGGUCGACCCC--CCCAACAUGAAGAACGC 5'

 -28.00 1 RIC-seq
chrX:139865500:139865514:[+] chr22:50904683:50904698:[-] nonBSJ supported Intron

circRNA 5':AGAAGCUC--CAAGUCU 3'


            |||||| || |:|


target  3':ACUUCGACACGUCCGG 5'

 -11.40 1 RIC-seq
chrX:139865500:139865515:[+] chr22:50904683:50904699:[-] nonBSJ supported Intron

circRNA 5':AGAAGCUC--CAAGUCUU 3'


            |||||| || |:|:


target  3':ACUUCGACACGUCCGGG 5'

 -11.90 26 RIC-seq