Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865427:139865449:[+] chr22:42393717:42393747:[+] nonBSJ supported 3UTR

circRNA 5': AGAUAA-UC------CUGAGCUUCCAGAAA 3'


            |||| || ||||| |||||


target  3':CUCUAGGGAGAAUAACGACUCACCUGUCUUC 5'

 -11.10 13 RIC-seq
chrX:139865516:139865550:[+] chr22:42393605:42393634:[+] nonBSJ supported 3UTR

circRNA 5':CCAGUAAAUCAAGUC--UUCCAGCAAAUCCAGUCUUC 3'


            ||| ||||| :|||||||| |||||


target  3':UGUCUUCU--UUCAGUUGAGGUCGUUA----CAGAA 5'

 -20.60 1 RIC-seq
chrX:139865516:139865551:[+] chr22:42393603:42393634:[+] nonBSJ supported 3UTR

circRNA 5':CCAGUAAAUCAAGUC--UUCCAGCAAAUCCAGUCUUCC 3'


            ||| ||||| :|||||||| ||||||


target  3':UGUCUUCU--UUCAGUUGAGGUCGUUA----CAGAAGA 5'

 -24.40 24 RIC-seq
chrX:139866331:139866358:[+] chr22:42393603:42393627:[+] nonBSJ supported 3UTR

circRNA 5':CAGGUC--UUCCAGGAAAUCCGUGUCUUCC 3'


            |:||| :||||| | :|||||||


target  3':UUUCAGUUGAGGUCGU-----UACAGAAGA 5'

 -21.40 20 RIC-seq
chrX:139866629:139866646:[+] chr22:42394040:42394062:[+] nonBSJ supported 3UTR

circRNA 5':AGCAUCUCCA------GGGCUUCC 3'


            |||||:|| ||||:||


target  3':ACGUAGGGGAUCCGCACCCGGAG 5'

 -23.90 1 RIC-seq
chrX:139866629:139866661:[+] chr22:42394029:42394062:[+] nonBSJ supported 3UTR

circRNA 5':AGCAUCUCCAGGGCUUCCAGCAUC-UGCU-CGUCU 3'


            |||||:|| :||| || || |||| |:||


target  3':ACGUAGGGGAUCCGCACC-CGGAGAACGAGGUAGU 5'

 -32.40 14 RIC-seq
chrX:139866237:139866277:[+] chr22:42383210:42383244:[+] nonBSJ supported CDS

circRNA 5':AGUCCACGUCUUCCAACAAA-GCCAUGUCUUCCAGACUAUCC 3'


            ||| | |||| :|| |:||||| |||||


target  3':CCAGU--C-GAAGUAAAACUGUGG--CGGAAGGA--GAUAGU 5'

 -22.10 1 RIC-seq
chrX:139866237:139866278:[+] chr22:42383209:42383243:[+] nonBSJ supported CDS

circRNA 5':AGUCCACGUCUUCCAACAAA-GCCAUGUCUUCCAGACUAUC-CA 3'


            ||| | |||| :|| |:||||| ||||| |


target  3': CAGU--C-GAAGUAAAACUGUGG--CGGAAGGA--GAUAGUG 5'

 -21.70 1 RIC-seq
chrX:139866237:139866278:[+] chr22:42383209:42383244:[+] nonBSJ supported CDS

circRNA 5':AGUCCACGUCUUCCAACAAA-GCCAUGUCUUCCAGACUAUC-CA 3'


            ||| | |||| :|| |:||||| ||||| |


target  3':CCAGU--C-GAAGUAAAACUGUGG--CGGAAGGA--GAUAGUG 5'

 -22.50 14 RIC-seq
chrX:139866256:139866278:[+] chr22:42383209:42383227:[+] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCCAGACUAUC-CA 3'


            ||| |:||||| ||||| |


target  3':GUGG--CGGAAGGA--GAUAGUG 5'

 -17.40 10 RIC-seq
chrX:139866759:139866816:[+] chr22:42383655:42383703:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAACGUCUCCAGUG-UGCUGAUCUUCUGACAUUCAGGU-CUUCCAGUGUCUGCA 3'


            |||||| |:| || |||:||:|| |||||| |||| ||: ||||


target  3':AAGAAGGAC--------CGCUACAACUGGAGGAGG--AAGUCCUUGAAGAGCAU-GACGA 5'

 -42.10 11 RIC-seq
chrX:139866771:139866816:[+] chr22:42383655:42383699:[+] nonBSJ supported CDS

circRNA 5':CUCCA-GUG-UGCUGAUCUUCUGACAUUCAGGU-CUUCCAGUGUCUGCA 3'


            ||| |:| || |||:||:|| |||||| |||| ||: ||||


target  3': AGGACCGCUACAACUGGAGGAGG--AAGUCCUUGAAGAGCAU-GACGA 5'

 -39.40 11 RIC-seq
chrX:139866772:139866816:[+] chr22:42383655:42383698:[+] nonBSJ supported CDS

circRNA 5':UCCA-GUG-UGCUGAUCUUCUGACAUUCAGGU-CUUCCAGUGUCUGCA 3'


            || |:| || |||:||:|| |||||| |||| ||: ||||


target  3': GGACCGCUACAACUGGAGGAGG--AAGUCCUUGAAGAGCAU-GACGA 5'

 -37.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866759:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866771:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866772:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC