Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865411:139865425:[+] chr22:38284461:38284476:[+] nonBSJ supported 3UTR

circRNA 5':AAUC-UCAAGGUCUUC 3'


            ||| |||||||||:


target  3':AUAGUAGUUCCAGAGA 5'

 -17.20 7 RIC-seq
chrX:139865411:139865447:[+] chr22:38284444:38284476:[+] nonBSJ supported CDS

circRNA 5':AAUC-UCAAGGUCUUCCAGAUAAUCCUGAGCUUC--CAGA 3'


            ||| |||||||||: |||:: |||| |||


target  3':AUAGUAGUUCCAGAGAC------AGGGUA-GAAGAAGUCC 5'

 -22.90 1 RIC-seq
chrX:139865411:139865465:[+] chr22:38284444:38284476:[+] nonBSJ supported CDS

circRNA 5':AAUC-UCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAGAAAAUCCACAUCUUC--CAGA 3'


            ||| |||||||||: ||| ||||||| |||


target  3':AUAGUAGUUCCAGAGAC------------------------AGG-GUAGAAGAAGUCC 5'

 -28.10 17 RIC-seq
chrX:139865415:139865461:[+] chr22:38284451:38284472:[+] nonBSJ supported CDS

circRNA 5': UCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAGAAAAUCCACAUCUUC 3'


            |||||||||: ||| ||||||


target  3':UAGUUCCAGAGAC------------------------AGG-GUAGAA 5'

 -20.20 2 RIC-seq
chrX:139865415:139865462:[+] chr22:38284450:38284472:[+] nonBSJ supported CDS

circRNA 5': UCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAGAAAAUCCACAUCUUCC 3'


            |||||||||: ||| |||||||


target  3':UAGUUCCAGAGAC------------------------AGG-GUAGAAG 5'

 -23.80 13 RIC-seq