Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866569:139866621:[+] chr22:18020163:18020224:[+] nonBSJ supported CDS

circRNA 5': UCUUCCAACUAAGCUA--CGUCUUCCAACAAAUCCA--------------UGUCUUCCUAUAUCUCCAG 3'


            |||:|| ||| |:||:|| | |||||| |||| ||| |||||||


target  3':AAGAGGG------CGAAAAGUAGGAGA--GCUUAGGUUUUAAGAAGUAGACACAG-AGGUAGAAGAGGUCC 5'

 -38.20 1 RIC-seq
chrX:139866569:139866623:[+] chr22:18020162:18020224:[+] nonBSJ supported CDS

circRNA 5': UCUUCCAACUAAGCUA--CGUCUUCCAACAAAUCCA--------------UGUCUUCCUAUAUCUCCAGGU 3'


            |||:|| ||| |:||:|| | |||||| |||| ||| ||||||||


target  3':AAGAGGG------CGAAAAGUAGGAGA--GCUUAGGUUUUAAGAAGUAGACACAG-AGGUAGAAGAGGUCCU 5'

 -41.90 9 RIC-seq
chrX:139866570:139866623:[+] chr22:18020162:18020223:[+] nonBSJ supported CDS

circRNA 5': CUUCCAACUAAGCUA--CGUCUUCCAACAAAUCCA--------------UGUCUUCCUAUAUCUCCAGGU 3'


            ||:|| ||| |:||:|| | |||||| |||| ||| ||||||||


target  3':AGAGGG------CGAAAAGUAGGAGA--GCUUAGGUUUUAAGAAGUAGACACAG-AGGUAGAAGAGGUCCU 5'

 -40.30 13 RIC-seq
chrX:139866586:139866623:[+] chr22:18020162:18020192:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGGU 3'


            ||||| ||| |||| ||| ||||||||


target  3':AAGAAG------UAGACACAG-AGGUAGAAGAGGUCCU 5'

 -27.60 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866569:139866621:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866569:139866623:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866570:139866623:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866586:139866623:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC